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Author SHA1 Message Date
Stephen Mardson McQuay 61c0888dcd merge 2011-05-26 10:13:50 -06:00
Stephen Mardson McQuay 13a083198e minor: another entry in the ignore file 2011-05-26 10:13:45 -06:00
Stephen Mardson McQuay c07ec88824 updated main submit script to point at new minion submit script 2011-05-26 10:13:28 -06:00
Stephen Mardson McQuay 941f224f01 minor: split up one-liner 2011-05-26 10:12:53 -06:00
Stephen Mardson McQuay 7392098ca8 made the minion submit script more legible 2011-05-26 10:12:33 -06:00
Stephen Mardson McQuay a1527b25c8 made iqmanager more complicated and better 2011-05-26 10:12:01 -06:00
Stephen Mardson McQuay c08504a089 simplified results for benchmark tests 2011-05-24 18:42:42 -06:00
Stephen Mardson McQuay f79e538b67 added options to the server process 2011-05-24 18:42:27 -06:00
Stephen Mardson McQuay 779608f13e added script to assist in memory and cputime estimations 2011-05-24 18:41:56 -06:00
Stephen Mardson McQuay 621e4c5303 added torque submission scripts 2011-05-24 18:40:17 -06:00
Stephen Mardson McQuay 559baa4315 minor 2011-05-08 20:50:55 -06:00
Stephen Mardson McQuay cfabfc119f minor: more verbosity for minion 2011-05-08 20:46:45 -06:00
Stephen Mardson McQuay a54bccb2d0 more verbose minion 2011-05-08 20:43:43 -06:00
Stephen Mardson McQuay 3628f2cea4 minor doc tweak 2011-05-08 13:39:19 -06:00
Stephen Mardson McQuay 88520ffe33 renamed slave to minion 
--HG--
rename : bin/slave.py => bin/minion.py
 2011-05-08 13:36:06 -06:00
Stephen Mardson McQuay cbe1a778c9 added resolution study script 2011-05-06 11:02:24 -06:00
Stephen Mardson McQuay ff28008eb5 minor: log level 2011-05-04 21:49:27 -06:00
Stephen Mardson McQuay 2e7391f573 fixed the pattern function and the memoization thereof 2011-05-04 21:09:15 -06:00
Stephen Mardson McQuay 08f898d83a fixed the baker paper test 2011-05-04 21:08:48 -06:00
Stephen Mardson McQuay 1cde1d9a01 removed uneccesary import 2011-05-04 20:24:35 -06:00
Stephen Mardson McQuay 1aa2be7320 minor: put X at (0.5, 0.5) 2011-05-04 20:23:49 -06:00
Stephen Mardson McQuay 5a8c29e1e1 ordered required libs so they build correctly. also added version variable 2011-05-04 20:23:27 -06:00
Stephen Mardson McQuay e65f67893d keep track of timing of gbench 2011-04-02 02:35:59 -06:00
Stephen Mardson McQuay 314142b11a added a qstat like script 2011-04-01 14:51:12 -06:00
Stephen Mardson McQuay ba1fd5e3a4 added a bootstrap script for queue interaction 2011-04-01 14:25:27 -06:00
Stephen Mardson McQuay dbba5c4044 bug fix 2011-03-31 21:19:20 -06:00
Stephen Mardson McQuay 7285da3566 got rid of driver script since the current gbench.py does it all now 2011-03-29 18:57:15 -06:00
Stephen Mardson McQuay 69cb376c3c fixed default grid type 2011-03-29 13:17:49 -06:00
Stephen Mardson McQuay fda2246c14 handled case where there is no config file 2011-03-23 11:51:54 -06:00
Stephen Mardson McQuay fca5a5c600 merge 2011-03-21 15:24:30 -06:00
Stephen Mardson McQuay e856851f1e moved the qhull generator into the base grid class 2011-03-21 15:24:25 -06:00
Stephen Mardson McQuay b83dd04e14 made the messages a bit more verbose (can investigate for interpolation) 2011-03-03 00:59:47 -07:00
Stephen Mardson McQuay 8f6d8ddc50 minor: made the submit script start/end on sys.argv params 2011-03-03 00:59:31 -07:00
Stephen Mardson McQuay 89da68878a meaningful input to submit script 2011-03-03 00:38:47 -07:00
Stephen Mardson McQuay f125a653b1 working slave/master setup 2011-03-03 00:20:03 -07:00
Stephen Mardson McQuay eefcc682cc added something to consume the service 2011-03-03 00:03:52 -07:00
Stephen Mardson McQuay cbc2d13e70 in progress 2011-03-03 00:01:46 -07:00
Stephen Mardson McQuay 8b1670fdc0 added a server 2011-03-02 23:26:04 -07:00
Stephen Mardson McQuay 58d651969e added client 2011-03-02 23:15:14 -07:00
Stephen Mardson McQuay da95afb14d changed the 2D gmsh to work with new baker method 2011-02-20 19:23:01 -07:00
Stephen Mardson McQuay ea8821fbff commented out the connectivity construction 2011-02-15 09:03:33 -07:00
Stephen Mardson McQuay 8fcb91ebd2 merge 2011-02-07 09:40:01 -07:00
Stephen Mardson McQuay 7a1ef49934 minor 2011-02-07 09:39:48 -07:00
Stephen Mardson McQuay 6751a22adb stubbed out a test for ordering 2011-02-02 18:40:23 -07:00
Stephen Mardson McQuay 2329479a64 minor 2011-02-02 11:52:53 -07:00
Stephen Mardson McQuay 046e24b67d made the get_phis and qlinear functions work independant of dimension 2011-02-02 10:56:20 -07:00
Stephen Mardson McQuay 53d555914e used verts instead of points 2010-11-08 16:26:20 -07:00
Stephen Mardson McQuay c6a9f38046 minor: removed useless improts, and changed used appropriate class variable 2010-11-08 16:25:59 -07:00
Stephen Mardson McQuay 2471f650bc updated some imports 2010-11-08 16:25:09 -07:00
Stephen Mardson McQuay 93fec67cc7 refactored the term 'face' to 'cell' to match what I've found in literature 2010-11-08 15:07:48 -07:00
Stephen Mardson McQuay 075dd586a3 got annoyed by the egg folder, so have changed the name of the project 2010-11-08 15:04:41 -07:00
Stephen Mardson McQuay 8e83439a6d the exact funcs now log what they're doing when they're called 2010-11-01 15:54:12 -06:00
Stephen Mardson McQuay a5cae0eebe starting to implement 3D test case by brute force, very ugly 2010-11-01 15:53:37 -06:00
Stephen Mardson McQuay d6421524f3 realized I didn't need the exact_func in the grid object 2010-11-01 15:53:06 -06:00
Stephen Mardson McQuay 456ecf759f added one more 2D gmsh test case 2010-11-01 15:52:45 -06:00
Stephen Mardson McQuay 37f056e49b added 3D gmsh case 2010-11-01 15:52:03 -06:00
Stephen Mardson McQuay 17b22c173d added a 3d gmsh test script 2010-11-01 15:51:40 -06:00
Stephen Mardson McQuay 81f1c6557a added interactive prompt bootstraping code 2010-11-01 15:51:16 -06:00
Stephen Mardson McQuay 3aefd7b75c made one test approximate 2010-11-01 15:50:54 -06:00
Stephen Mardson McQuay 656394e747 updated for directory structure changes 2010-10-29 21:34:15 -06:00
Stephen Mardson McQuay 22a8855a99 removed the old baker error routines 2010-10-29 21:05:21 -06:00
Stephen Mardson McQuay bcf1622f35 added a generic get simplex and points function to the grid 2010-10-29 12:43:18 -06:00
Stephen Mardson McQuay 57685a1c04 smblog -> log ... again 2010-10-29 12:42:05 -06:00
Stephen Mardson McQuay e9fb1eab03 the gmsh grid object now instantiates its own KDTree 2010-10-29 12:41:39 -06:00
Stephen Mardson McQuay 967170d765 changed points to verts in baker 2010-10-29 12:40:32 -06:00
Stephen Mardson McQuay 699d0c1796 started testing the parametric varying of the solution scheme 2010-10-29 12:39:45 -06:00
Stephen Mardson McQuay c5adab295b minor: but i'm on the verge of implementing the cubic error term for 3D 2010-04-30 16:23:29 -06:00
Stephen Mardson McQuay a1c88a186e something about the changes I made (abs -> np.abs) made my stuff succeed more often 2010-04-30 11:56:01 -06:00
Stephen Mardson McQuay 3dcc10ea0e working on the containing simplex problem. the get containing simplex function works, if the point is in the domain. I am trying to force the domain to contain the point (placing points along perimiter of the mesh). I am not doing that right, but have to run 
--HG--
rename : bin/qhull-029.txt => data/qhull-029.txt
rename : bin/qhull-029.txt.gv => data/qhull-029.txt.gv
 2010-04-24 18:26:44 -06:00
Stephen Mardson McQuay cfcd1e15a2 working on the guarantee simplex routine. I have a test case to try it out against, and need to look at visiting neighbors of faces adjacent to points. 2010-04-23 16:29:31 -06:00
Stephen Mardson McQuay 0a388ff1b5 trying to guarantee a containing simplex 2010-04-23 09:58:30 -06:00
Stephen Mardson McQuay 79880acad4 fixed discrepancy with Baker's eq 17. 2010-04-09 15:03:16 -06:00
Stephen Mardson McQuay 3efe335563 moved the quadratic error calculation out of the baker method, and added a cubic version too 2010-04-02 11:06:17 -06:00
Stephen Mardson McQuay 700ccc8c25 created a test for tesing the cubic interpolation 2010-03-20 20:09:46 -06:00
Stephen Mardson McQuay 1fc988428d putting together a simple test case so that I can test my quad/cubic interpolator 2010-03-20 17:10:02 -06:00
Stephen Mardson McQuay 993c901cec properly catching the LinAlgError. also, prepping to change the run_baker method (more generic) 2010-03-20 11:34:24 -06:00
Stephen Mardson McQuay bd8f24d64f working on implementing the cubic interpolation. need to split that routine out of the run_baker method 2010-03-19 21:27:51 -06:00
Stephen Mardson McQuay f089848a1b i think part of my problem (why i'm not always getting win), is that i do not guarantee that the simplex contains the point (especially with the random clounds; i think that the connectivity-based lookup is doing that fine 2010-03-18 23:50:40 -06:00
Stephen Mardson McQuay 9836fdcbfe added files. still not consistently getting better numbers 2010-03-18 23:32:24 -06:00
Stephen Mardson McQuay b33159f8a9 working on getting baker to work in 3D. the code runs, but the numbers are odd. I suspect the rectangular grid, and am going to try a random cloud of points. 2010-03-18 23:18:59 -06:00
Stephen Mardson McQuay a2d7b3f063 updated library files so that i don't have to edit the __init__.py files 
--HG--
rename : lib/baker/__init__.py => lib/baker/baker.py
rename : lib/grid/__init__.py => lib/grid/grid.py
 2010-03-08 14:30:22 -07:00
Stephen Mardson McQuay b9ea6a3ac2 modified code to use Distribute (python's distribution framework) 
one should simply run `python setup.py install` to install these librarires
 2010-03-08 13:31:51 -07:00
Stephen Mardson McQuay 9a1b8d14b2 finally added proper (in my opinon) exception handling to the grid's run_baker method. it should properly autocorrect, and switch the extra point lookup scheme to connectivity-based if solving the system of equations yields a singular solution 2010-03-05 08:58:07 -07:00
Stephen Mardson McQuay 2792329eaa cleaned up the method (removed print statements) i'm ready to now add this method as an option to the mesh object 2010-02-21 20:52:51 -07:00
Stephen Mardson McQuay a3d72ed200 wrote the method that returns grid objects based on connectivity 
I'm going to hurry and clean up this method, but for now it is verbose, and uses sets. i'm going to just check it in for future reference
 2010-02-21 20:42:32 -07:00
Stephen Mardson McQuay 0ef6897aee made a simplex class, going to move this into the face class to simplify 2010-02-21 19:02:45 -07:00
Stephen Mardson McQuay 2cf9a0b574 mostly fixed a bug in my qdelaunay parsing. implemented a blender viewer ... mostly 
the qdelaunay app doesn't alway display all faces for a point. lame. I worked around it by creating the point-> face relationships manually.

There is a max recursion something happeneing when I try to save so pickle. look into this.

I spent some time writing a visualizer for blender. 10 lines of code. simple stuff.

next steps would be to move the KDTree into the mesh object. GOOD LUCK (me)!!

--HG--
rename : bin/grid_driver.py => bin/grid_random.py
rename : bin/grid_driver.py => bin/grid_regular.py
 2010-02-14 20:56:41 -07:00
Stephen Mardson McQuay 9ff48f4c12 minor: added point to facet information to the grid object 
I really think that I need to create my own point object, and hang the facet information directly off of that. right now there are simply parallel arrays for q, numpy.array(x,y), and {point_index: [adjacent faces]} ...

work to be done!
 2010-02-10 00:20:06 -07:00
Stephen Mardson McQuay 9064663600 added face information to the grid. i need to parse and add point->face information ... somehow ... 2010-02-07 20:23:19 -07:00
Stephen Mardson McQuay 50daeb5d74 getting stuff from qdelaunay 
mostly spent time trying to figure out subprocess (which i though i already understood). I am concerned for what will happen with large datasets.

next steps include:
1) design data struture
2) implement slurping of stdout into this structure
3) drink coke

--HG--
rename : lib/smcqhull.py => lib/smcqdelaunay.py
 2010-02-07 00:01:02 -07:00
Stephen Mardson McQuay f9973e7580 minor, updated the driver to handle linear case 2010-01-31 21:15:47 -07:00
Stephen Mardson McQuay 0f4daa9a9c fixed a little bug and getting good results again. still will have problems if you try to simply get a linear interpolation 2010-01-31 21:10:37 -07:00
Stephen Mardson McQuay 2113abb8dc minor: updated the .setup file 2010-01-31 20:51:25 -07:00
Stephen Mardson McQuay 80720c45fe MAJOR: updated the baker method. it's more generic, and should allow me to 3D-ifiy it more simply. a ton of other things 2010-01-31 20:47:03 -07:00
Stephen Mardson McQuay 98b13fb8c5 merged the drivers, and am investigating the qdelauney manpage ... should've done this earlier :P 
--HG--
rename : bin/driver-random.py => bin/driver.py
rename : test/utest.py => test/qhull.test.py
 2010-01-30 12:15:00 -07:00
Stephen Mardson McQuay f4b2c95cf5 working on adding 3D baker. also starting to massage together a good baker method test (2D), and added a stub file for 3D testing 2010-01-29 11:56:52 -07:00
Stephen Mardson McQuay 961b3b7b26 init 2009-12-27 10:48:27 -07:00