minor: mostly documentation and logging

interp/baker/__init__.py

@@ -37,7 +37,7 @@ def get_phis(X, R):
   """
 
   # baker: eq 7
-  # TODO: perhaps also test R .. ?
+  # TODO: perhaps also test len(R[0])  .. ?
   if len(X) == 2:
     A = np.array([
                   [      1,       1,       1],
@@ -68,7 +68,7 @@ def get_phis(X, R):
   except np.linalg.LinAlgError as e:
     msg = "calculation of phis yielded a linearly dependant system (%s)" % e
     log.error(msg)
-    raise Exception(msg)
+    # raise Exception(msg)
     phi = np.dot(np.linalg.pinv(A), b)
 
   return phi
@@ -80,8 +80,7 @@ def qlinear(X, R):
     also, this is baker eq 3
 
     X = destination point
-    R = simplex points
-    q = quantity of interest at the simplex points
+    R = a inter.grid object; must have R.points and R.q
   """
 
   phis = get_phis(X, R.verts)
@@ -134,7 +133,7 @@ def get_error(phi, R, S, order = 2):
       cur_sum *= phi[j]
     error_term += cur_sum
 
-  log.debug("error_term smb: %s" % error_term)
+  log.debug("error_term: %s" % error_term)
   return error_term, abc
 
 def run_baker(X, R, S, order=2):
@@ -173,6 +172,8 @@ def run_baker(X, R, S, order=2):
   answer['final'] =  q_final
   answer['abc'  ] =  abc
 
+  log.debug(answer)
+
   return answer
 
 def run_baker_3D(X, R, S):

test/2dquadratic.py

@@ -32,7 +32,6 @@ class TestSequenceFunctions(unittest.TestCase):
     self.X = [0.55, 0.45]
 
     self.g = grid(self.points, self.q)
-    self.g.construct_connectivity()
     self.R = self.g.create_mesh(range(3))
 
     self.exact = exact_func(self.X)