added framework for running parametric test on marylou
This commit is contained in:
parent
a1bd6a7257
commit
dc15bd17bb
|
|
@ -0,0 +1,100 @@
|
|||
#!/usr/bin/env python
|
||||
|
||||
import sys
|
||||
import os
|
||||
import time
|
||||
|
||||
from multiprocessing.managers import BaseManager
|
||||
|
||||
from optparse import OptionParser
|
||||
import datetime
|
||||
|
||||
import numpy as np
|
||||
|
||||
import interp.bootstrap
|
||||
from interp.grid.gmsh import ggrid
|
||||
from interp.tools import baker_exact_3D as exact
|
||||
|
||||
from interp.cluster import QueueManager, get_qs
|
||||
|
||||
if __name__ == '__main__':
|
||||
parser = OptionParser(usage = "usage: %s [options] <server> <gmsh file>")
|
||||
|
||||
parser.add_option("-v", "--verbose",
|
||||
action="store_true", dest="verbose", default=False,
|
||||
help="verbose flag (default: %default)")
|
||||
|
||||
parser.add_option('-p', '--port',
|
||||
type="int", dest="port", default=6666,
|
||||
help="specify the port to use on the server (default: %default)")
|
||||
|
||||
(options, args) = parser.parse_args()
|
||||
|
||||
if len(args) != 2:
|
||||
parser.print_usage()
|
||||
sys.exit(1)
|
||||
|
||||
server, input_file = args
|
||||
|
||||
myname = "%s-%d" % (os.uname()[1], os.getpid())
|
||||
if options.verbose:
|
||||
print "%s: started" % myname
|
||||
|
||||
|
||||
m = QueueManager(address=(server, options.port), authkey='asdf')
|
||||
m.connect()
|
||||
|
||||
tasksq, resultsq, masterq, minionsq = get_qs(m)
|
||||
|
||||
if options.verbose:
|
||||
print "%s: starting parse input file" % myname
|
||||
g = ggrid(input_file)
|
||||
g.q = np.array([exact(x) for x in g.verts])
|
||||
if options.verbose:
|
||||
print "%s: done parsing input file" % myname
|
||||
|
||||
|
||||
while True:
|
||||
if options.verbose:
|
||||
print "%s: letting master know that I am ready" % myname
|
||||
masterq.put(myname)
|
||||
|
||||
if options.verbose:
|
||||
print "%s: waiting for master to tell me to start" % myname
|
||||
action = minionsq.get()
|
||||
if options.verbose:
|
||||
print "%s: master said go!!" % myname
|
||||
|
||||
if action in ('teardown', 'slay'):
|
||||
break
|
||||
|
||||
while not tasksq.empty():
|
||||
i, order, extra, X = tasksq.get()
|
||||
try:
|
||||
s = time.time()
|
||||
a = g.run_baker(X, order = order, extra_points = extra)
|
||||
cur_qlin = a['qlin' ]
|
||||
cur_error = a['error']
|
||||
cur_final = a['final']
|
||||
cur_exact = exact(X)
|
||||
e = time.time()
|
||||
duration = e-s
|
||||
except Exception as e:
|
||||
print >>sys.stderr, X, e
|
||||
cur_qlin = 0.0
|
||||
cur_error = 0.0
|
||||
cur_final = 0.0
|
||||
cur_exact = 0.0
|
||||
duration = 0
|
||||
|
||||
resultsq.put((
|
||||
i,
|
||||
cur_qlin,
|
||||
cur_error,
|
||||
cur_final,
|
||||
cur_exact,
|
||||
duration,
|
||||
))
|
||||
|
||||
if options.verbose:
|
||||
print "%s: exiting" % myname
|
||||
|
|
@ -0,0 +1,133 @@
|
|||
#!/usr/bin/env python
|
||||
|
||||
import sys
|
||||
import os
|
||||
|
||||
import time
|
||||
|
||||
import shelve
|
||||
from progressbar import *
|
||||
from collections import defaultdict
|
||||
from optparse import OptionParser
|
||||
import pickle
|
||||
|
||||
import numpy as np
|
||||
|
||||
import interp.bootstrap
|
||||
|
||||
import logging
|
||||
log = logging.getLogger("interp")
|
||||
|
||||
from interp.cluster import QueueManager, get_qs
|
||||
|
||||
if __name__ == '__main__':
|
||||
parser = OptionParser(usage = "%prog [options] <server> <destination vertexes file (pickle)>")
|
||||
|
||||
parser.add_option("-v", "--verbose",
|
||||
action="store_true", dest="verbose", default=False,
|
||||
help="verbose flag")
|
||||
|
||||
parser.add_option('-p', '--port',
|
||||
type="int", dest="port", default=6666,
|
||||
help="specify the port to use on the server (default: %default)")
|
||||
|
||||
parser.add_option('-n', '--node-count',
|
||||
type="int", dest="participants", default=None,
|
||||
help="specify how many participants we should wait for (default: %default)")
|
||||
|
||||
(options, args) = parser.parse_args()
|
||||
if len(args) != 2:
|
||||
parser.print_usage()
|
||||
sys.exit(1)
|
||||
|
||||
server, dest_verts = args
|
||||
|
||||
dest_verts = pickle.load(open(dest_verts, 'r'))
|
||||
|
||||
orders = [2,3,4,5]
|
||||
extras = [4,6,8,12,16,20,32,48,64,96,128,192,256]
|
||||
|
||||
|
||||
count = len(orders) * len(extras) * sum((len(i) for i in dest_verts))
|
||||
|
||||
results = [None] * count
|
||||
# results = [id, order, extra, X, qlin, err, final, exact, time]
|
||||
|
||||
m = QueueManager(address=(server, options.port), authkey='asdf')
|
||||
m.connect()
|
||||
|
||||
tasksq, resultsq, masterq, minionsq = get_qs(m)
|
||||
|
||||
if not options.participants:
|
||||
print "wait on all announced participants"
|
||||
participants = 0
|
||||
while not masterq.empty():
|
||||
participants += 1
|
||||
worker = masterq.get()
|
||||
print "%s (%d)" % (worker,participants)
|
||||
if participants == 0:
|
||||
print "nobody found"
|
||||
sys.exit(1)
|
||||
else:
|
||||
participants = options.participants
|
||||
print "wait on %d participants" % participants
|
||||
for i in xrange(participants):
|
||||
worker = masterq.get()
|
||||
print "%s (%d/%d)" % (worker, i+1, participants)
|
||||
|
||||
print "Submitting %d pieces of workload" % count
|
||||
|
||||
widgets = ['submit jobs: ', Percentage(), ' ', Bar(), ' ', ETA()]
|
||||
pbar = ProgressBar(widgets = widgets, maxval = count)
|
||||
pbar.start()
|
||||
|
||||
submit_start = time.time()
|
||||
i = 0
|
||||
for order in orders:
|
||||
for extra in extras:
|
||||
for d in dest_verts:
|
||||
for X in d:
|
||||
cur_job = (i, order, extra, X)
|
||||
results[i] = [ order, extra, X]
|
||||
# tasksq.put(cur_job)
|
||||
i+=1
|
||||
pbar.update(i)
|
||||
submit_end = time.time()
|
||||
pbar.finish()
|
||||
|
||||
print "it took %0.2f seconds to submit the workload" % (submit_end - submit_start,)
|
||||
|
||||
print "len(results)", len(results)
|
||||
|
||||
for i in xrange(participants):
|
||||
print "sending worker %d start message" % (i+1,)
|
||||
minionsq.put("start")
|
||||
|
||||
receive_start = time.time()
|
||||
widgets = ['interpolate: ', Percentage(), ' ', Bar(), ' ', ETA()]
|
||||
pbar = ProgressBar(widgets = widgets, maxval = count)
|
||||
pbar.start()
|
||||
for i in xrange(count):
|
||||
rid, qlin, err, final, exact, duration = resultsq.get()
|
||||
results[rid].extend((qlin, err, final, exact, duration))
|
||||
pbar.update(i+1)
|
||||
receive_end = time.time()
|
||||
pbar.finish()
|
||||
|
||||
pickle.dump(results, open("results.p"))
|
||||
|
||||
submit = submit_end - submit_start
|
||||
receive = receive_end - receive_start
|
||||
|
||||
# shut down all participants
|
||||
for i in xrange(participants):
|
||||
minionsq.put("teardown")
|
||||
|
||||
# post processing
|
||||
stats = {}
|
||||
stats['submit' ] = float(submit)
|
||||
stats['receive' ] = float(receive)
|
||||
stats['count' ] = count
|
||||
stats['participants'] = participants
|
||||
|
||||
print "%s" % stats
|
||||
Loading…
Reference in New Issue