working 2D gmsh parser

bin/parse_gmsh.py

@@ -1,52 +1,69 @@
 #!/usr/bin/env python
+import atexit
+import os
+import sys
+import readline
+import rlcompleter
+
+historyPath = os.path.expanduser("~/.pyhistory")
+
+def save_history(historyPath=historyPath):
+  import readline
+  readline.write_history_file(historyPath)
+
+if os.path.exists(historyPath):
+  readline.read_history_file(historyPath)
+
+atexit.register(save_history)
+del os, atexit, readline, rlcompleter, save_history, historyPath
+
 
 import sys
 import pickle
-from pudb import set_trace
 from itertools import combinations
 
+import numpy as np
+
 THREE_NODE_TRIANGLE = 2
 
 class point(object):
-  def __init__(self, index, x, y, z):
+  def __init__(self, xyz):
     self.index = index
-    self.x     = x
-    self.y     = y
-    self.z     = z
 
-    self.points = []
+    self.xyz    = xyz
     self.faces  = []
 
   def __getitem__(self, i):
     if isinstance(i, int):
       if   i == 0:
-        return self.x
+        return self.xyz[0]
       elif i == 1:
-        return self.y
+        return self.xyz[1]
       elif i == 2:
-        return self.z
+        return self.xyz[2]
       else:
         raise IndexError("there are only (x,y,z)")
-    elif isinstance(i, str):
-      if i == 'x':
-        return self.x
-      elif i == 'y':
-        return self.y
-      elif i == 'z':
-        return self.z
-      else:
-        raise IndexError
     else:
-      raise TypeError("only p.x, p[0], and p['x'] access allowed")
+      raise TypeError("only point.x and point[0] access allowed")
+
+  def _getx(self):
+    return self.xyz[0]
+  x = property(_getx)
+  def _gety(self):
+    return self.xyz[1]
+  y = property(_gety)
+  def _getz(self):
+    return self.xyz[2]
+  z = property(_getz)
 
   def __str__(self):
-    return '(%f, %f, %f)' % (self.x, self.y, self.z)
+    return '%s' % self.xyz
   __repr__ = __str__
 
 class face(object):
-  def __init__(self, index):
+  def __init__(self):
-    self.index = index
     self.neighbors = []
+    self.points = []
 
 if __name__ == '__main__':
   if len(sys.argv) != 2:
@@ -65,6 +82,7 @@ if __name__ == '__main__':
   node_count = int(gmsh_file.readline())
 
   points = []
+  nppoints = np.zeros((node_count, 3))
   for i in xrange(node_count):
     cur_line = gmsh_file.readline()
     (index, x,y,z) = cur_line.split()
@@ -73,34 +91,35 @@ if __name__ == '__main__':
     y     = float(y)
     z     = float(z)
 
-    points.append(point(index, x,y,z))
+    nppoints[i][0] = x
+    nppoints[i][1] = y
+    nppoints[i][2] = z
+    points.append(point(nppoints[i]))
+
 
   gmsh_file.readline() # $EndNodes
   gmsh_file.readline() # $Elements
 
   element_count = int(gmsh_file.readline())
 
-  faces           = {}
   faceobjs        = {}
-  faces_for_point = {}
   neighbors       = {}
 
   for i in xrange(element_count):
     cur_line = gmsh_file.readline()
     cur_line = cur_line.split()
-    cur_face_index, type, rest = (int(cur_line[0]),
+    cur_face_index, node_type, rest = (int(cur_line[0]),
-                                  int(cur_line[1]),
+                                       int(cur_line[1]),
-                                  [int(j) for j in  cur_line[2:]])
+                                       [int(j) for j in  cur_line[2:]])
 
-    if(type == THREE_NODE_TRIANGLE):
+    if(node_type == THREE_NODE_TRIANGLE):
       points_for_cur_face = [i-1 for i in rest[rest[0]+1:]]
 
-      cur_face = face(cur_face_index)
+      cur_face = face()
 
       for cur_point in points_for_cur_face:
         points[cur_point].faces.append(cur_face_index)
 
-      faces[cur_face_index] = points_for_cur_face
       cur_face.points       = points_for_cur_face
 
       faceobjs[cur_face_index] = cur_face
@@ -119,4 +138,4 @@ if __name__ == '__main__':
       faceobjs[v[1]].neighbors.append(v[0])
 
   pickle.dump([(p[0], p[1], p[2]) for p in points], open('/tmp/points.p', 'w'))
-  pickle.dump(faces                               , open('/tmp/faces.p',  'w'))
+  pickle.dump([f.points for f in faceobjs.itervalues()], open('/tmp/faces.p',  'w'))

bin/plot.py

@@ -4,7 +4,7 @@ import bpy
 import pickle
 points = pickle.load(open('/tmp/points.p', 'r'))
 faces  = pickle.load(open('/tmp/faces.p', 'r'))
-faces = [faces[i] for i in faces]
+# faces = [faces[i] for i in faces]
 me = bpy.data.meshes.new('points')
 me.verts.extend(points)
 me.faces.extend(faces)